PDNL-SANA: Semi-Automatic Neuropathology Analysis

Notebooks:

• Interface with WSI's
  • Welcome to SANA (Semi-Automatic Neuropath Analysis)
  • Part 0: Setup
  • Part 1: Generic ROI
  • Part 2: Segment-based ROI
  • Part 3: Supplemental ROIs
  • Part 4: Big ROIs (slide scanning)
• Classify Positive Pixels
  • Part 0: Prepare the input data
  • Part 1: Extract the DAB
  • Part 2: Classify the DAB
• Normalize Cortical Spaces
  • Part 0: Setup
  • Part 1: Deforming the cortex
• Quantify ROIs
  • Part 0: Setup
  • Part 1: AO
  • Part 2: Cortical Depth Analysis
  • Part 3: ROI Subsampling